Publications

Research publications, software contributions, and academic work.
Each linked with accompanying materials and resources.

What Moves the Eyes: Doubling Mechanistic Model Performance Using Deep Networks to Discover and Test Cognitive Hypotheses

research
vision science
deep learning

Using DeepGaze III to discover targeted extensions for SceneWalk, doubling its explained variance on MIT1003 from 35% to 70% — a new state of the art in mechanistic scanpath prediction.

Sunday, the 9th of November, 2025
Federico D’Agostino, Lisa Schwetlick, Matthias Bethge †, Matthias Kümmerer †

openretina: Collaborative Retina Modelling Across Datasets and Species

research
software
neuroscience
deep learning

openretina: a PyTorch-based open-source platform unifying retinal data and models across species and labs, enabling reproducible neural circuit modelling within minutes.

Tuesday, the 11th of March, 2025
Federico D’Agostino †, Thomas Zenkel †, Dominic Gonschorek, Larissa Höfling, Thomas Euler, Matthias Bethge

A deep-learning strategy to identify cell types across species from high-density extracellular recordings

research
deep learning
neuroscience

Semi-supervised deep learning classifier identifying cerebellar cell types from Neuropixels waveforms and spike statistics with >95% accuracy, validated across labs and species.

Thursday, the 30th of January, 2025
Maxime Beau †, Federico D’Agostino †, David J. Herzfeld †, Francisco Naveros †, Marie E. Hemelt †, Marlies Oostland †, Alvaro Sánchez-López †, Young Yoon Chung, Michael Maibach, Stephen Kyranakis, Hannah N. Stabb, M. Gabriela Martínez Lopera, Agoston Lajko, Marie Zedler, Shogo Ohmae, Nathan J. Hall, Beverley A. Clark, Dana Cohen, Stephen G. Lisberger, Dimitar Kostadinov, Court Hull, Michael Häusser, Javier F. Medina

NeuroPyxels (npyx)

software
neuroscience
python

Open-source Python library for electrophysiologists working with Neuropixels, providing unified data loading, preprocessing, and visualization tools.

Sunday, the 1st of January, 2023
Maxime Beau, Federico D’Agostino, Agoston Lajko, Gabriela Martínez, Dimitar Kostadinov
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